Setting Up R

A personal reference guide for installing R

Eric Van Dornshuld
Jan 4, 2020 other
  1. R for windows in C:/
  2. Rtools in C:/
  3. Rstudio in C:/
  4. Add paths to $PATH
    • Right click start button on taskbar
    • Click “System”
    • Click “Advanced System Settings”
    • Click “Environment Variables”
    • In “System Variables” window, double click “Path”
    • Add the following paths:
      • C:\R\R-4.1.2\
      • C:\R\R-4.1.2\bin\
      • C:\rtools40
  5. Install some R packages (copy paste each line in the console)
```{r, eval=TRUE}`r ''`

	install.packages("devtools")
	install.packages("ggplot2")
	install.packages("plotly")
	install.packages("shiny")
	install.packages("tinytex")
	install.packages("reticulate")
	install.packages("gt")
	install.packages("ggExtra")
	install.packages("kableExtra")
	install.packages("ggpmisc")
	install.packages("gggrid")
	install.packages("ggraph")
	install.packages("gginnards")
	install.packages("gganimate")
	install.packages("ggforce")
	install.packages("ggtext")
	install.packages("ggthemes")
	install.packages("gifski")
	install.packages("cowplot")
	install.packages("svglite")
	install.packages("tidyverse")
	install.packages("rJava")
	install.packages("reshape2")
	install.packages("ggpmisc")
	install.packages("magick")
	install.packages('knitr')
	install.packages("writexl")
	install.packages("gapminder")

	remotes::install_github('rstudio/DT')
	remotes::install_github("JohnCoene/echarts4r")
	remotes::install_github("schochastics/graphlayouts")
	remotes::install_github("rstudio/webshot2")
	remotes::install_github("hafen/r2d3svg")
	remotes::install_github('rstudio/rmarkdown')
	remotes::install_github('rstudio/bookdown')
	remotes::install_github('rstudio/blogdown')
	remotes::install_github('rstudio/pagedown')
	remotes::install_github('yihui/xaringan')
	devtools::install_github("gadenbuie/xaringanExtra")
	remotes::install_github("juba/rmdformats")
	devtools::install_github("swsoyee/r3dmol")
	remotes::install_github("mwip/beautifyR")
	devtools::install_github('emitanaka/anicon')
	devtools::install_github("rstudio/fontawesome")
	remotes::install_github("mitchelloharawild/icons")
	devtools::install_github("zachcp/chemdoodle")
	devtools::install_github('r-lib/ragg')
	devtools::install_github('koenderks/aRtsy')
	devtools::install_github("rstudio/distill")
	remotes::install_github("rstudio/rticles")
	devtools::install_github("EvaMaeRey/flipbookr")
	remotes::install_github("dreamRs/esquisse")

```

For Wowchemy Site

  1. https://wowchemy.com/docs/getting-started/install-hugo-extended/
Eric Van Dornshuld
Eric Van Dornshuld
Assistant Clinical Professor

My research interests include modeling small molecule systems with convergent quantum chemistry.